Attribute | Operators | Type | Description |
---|---|---|---|
chem_comp.formula_weight | number | equals greater less greater_or_equal less_or_equal range exists | Formula mass of the chemical component. |
chem_comp.name | string | in exact_match contains_phrase contains_words exists | The full name of the component. |
chem_comp.type | string | in exact_match exists | For standard polymer components, the type of the monomer. Note that monomers that will form polymers are of three types: linking monomers, monomers with some type of N-terminal (or 5') cap and monomers with some type of C-terminal (or 3') cap. Allowed Values: D-beta-peptide, C-gamma linking , D-gamma-peptide, C-delta linking , D-peptide COOH carboxy terminus , D-peptide NH3 amino terminus , D-peptide linking , D-saccharide , D-saccharide, alpha linking , D-saccharide, beta linking , DNA OH 3 prime terminus , DNA OH 5 prime terminus , DNA linking , L-DNA linking , L-RNA linking , L-beta-peptide, C-gamma linking , L-gamma-peptide, C-delta linking , L-peptide COOH carboxy terminus , L-peptide NH3 amino terminus , L-peptide linking , L-saccharide , L-saccharide, alpha linking , L-saccharide, beta linking , RNA OH 3 prime terminus , RNA OH 5 prime terminus , RNA linking , non-polymer , other , peptide linking , peptide-like , saccharide |
pdbx_reference_molecule.class | string | in exact_match contains_phrase contains_words exists | Broadly defines the function of the entity. Allowed Values: Antagonist , Anthelmintic , Antibiotic , Antibiotic, Anthelmintic , Antibiotic, Antimicrobial , Antibiotic, Antineoplastic , Anticancer , Anticoagulant , Anticoagulant, Antithrombotic , Antifungal , Antigen , Antiinflammatory , Antimicrobial , Antimicrobial, Antiparasitic, Antibiotic , Antimicrobial, Antiretroviral , Antimicrobial, Antitumor , Antineoplastic , Antiparasitic , Antiretroviral , Antithrombotic , Antitumor , Antiviral , CASPASE inhibitor , Chaperone binding , Drug delivery , Enzyme inhibitor , Glycan component , Growth factor , Immunosuppressant , Inducer , Inhibitor , Lantibiotic , Metabolism , Metal transport , Nutrient , Oxidation-reduction , Protein binding , Receptor , Substrate analog , Synthetic opioid , Thrombin inhibitor , Thrombin inhibitor, Trypsin inhibitor , Toxin , Transition state mimetic , Transport activator , Trypsin inhibitor , Unknown , Water retention |
pdbx_reference_molecule.description | string | contains_phrase contains_words exists | Description of this molecule. |
pdbx_reference_molecule.name | string | contains_phrase contains_words exists | A name of the entity. |
pdbx_reference_molecule.prd_id | string | in exact_match exists | The value of _pdbx_reference_molecule.prd_id is the unique identifier for the reference molecule in this family. By convention this ID uniquely identifies the reference molecule in in the PDB reference dictionary. The ID has the template form PRD_dddddd (e.g. PRD_000001) |
pdbx_reference_molecule.type | string | in exact_match exists | Defines the structural classification of the entity. Allowed Values: Amino acid , Aminoglycoside , Ansamycin , Anthracycline , Anthraquinone , Chalkophore , Chalkophore, Polypeptide , Chromophore , Cyclic depsipeptide , Cyclic lipopeptide , Cyclic peptide , Glycopeptide , Heterocyclic , Imino sugar , Keto acid , Lipoglycopeptide , Lipopeptide , Macrolide , Non-polymer , Nucleoside , Oligopeptide , Oligosaccharide , Peptaibol , Peptide-like , Polycyclic , Polypeptide , Polysaccharide , Quinolone , Siderophore , Thiolactone , Thiopeptide , Unknown |
pdbx_reference_molecule_family.name | string | contains_phrase contains_words exists | The entity family name. |
pdbx_reference_molecule_related_structures.db_code | string | contains_phrase contains_words exists | The database identifier code for the related structure reference. |
pdbx_reference_molecule_synonyms.name | string | contains_phrase contains_words exists | A synonym name for the entity. |
rcsb_chem_comp_annotation.annotation_id | string | in exact_match exists | An identifier for the annotation. |
rcsb_chem_comp_annotation.description | string | in exact_match contains_phrase contains_words exists | A description for the annotation. |
rcsb_chem_comp_annotation.name | string | in exact_match contains_phrase contains_words exists | A name for the annotation. |
rcsb_chem_comp_annotation.type | string | in exact_match exists | A type or category of the annotation. Allowed Values: ATC , Carbohydrate Anomer , Carbohydrate Isomer , Carbohydrate Primary Carbonyl Group , Carbohydrate Ring , Generating Enzyme , Modification Type , PSI-MOD |
rcsb_chem_comp_annotation.annotation_lineage.depth | integer | equals greater less greater_or_equal less_or_equal range exists | Members of the annotation lineage as parent lineage depth (1-N) |
rcsb_chem_comp_annotation.annotation_lineage.id | string | in exact_match exists | Members of the annotation lineage as parent class identifiers. |
rcsb_chem_comp_annotation.annotation_lineage.name | string | in exact_match contains_phrase contains_words exists | Members of the annotation lineage as parent class names. |
rcsb_chem_comp_container_identifiers.comp_id | string | in exact_match exists | The chemical component identifier. |
rcsb_chem_comp_container_identifiers.drugbank_id | string | in exact_match exists | The DrugBank identifier corresponding to the chemical component. |
rcsb_chem_comp_container_identifiers.prd_id | string | in exact_match exists | The BIRD definition identifier. |
rcsb_chem_comp_container_identifiers.rcsb_id | string | in exact_match exists | A unique identifier for the chemical definition in this container. |
rcsb_chem_comp_descriptor.InChIKey | string | in exact_match exists | Standard IUPAC International Chemical Identifier (InChI) descriptor key for the chemical component InChI, the IUPAC International Chemical Identifier, by Stephen R Heller, Alan McNaught, Igor Pletnev, Stephen Stein and Dmitrii Tchekhovskoi, Journal of Cheminformatics, 2015, 7:23 |
rcsb_chem_comp_info.atom_count_chiral | integer | equals greater less greater_or_equal less_or_equal range exists | Chemical component chiral atom count |
rcsb_chem_comp_info.atom_count_heavy | integer | equals greater less greater_or_equal less_or_equal range exists | Chemical component heavy atom count |
rcsb_chem_comp_info.bond_count | integer | equals greater less greater_or_equal less_or_equal range exists | Chemical component total bond count |
rcsb_chem_comp_info.bond_count_aromatic | integer | equals greater less greater_or_equal less_or_equal range exists | Chemical component aromatic bond count |
rcsb_chem_comp_info.initial_deposition_date | date | equals greater less greater_or_equal less_or_equal range exists | The date the chemical definition was first deposited in the PDB repository. |
rcsb_chem_comp_info.initial_release_date | date | equals greater less greater_or_equal less_or_equal range exists | The initial date the chemical definition was released in the PDB repository. |
rcsb_chem_comp_related.resource_accession_code | string | in exact_match exists | The resource identifier code for the related chemical reference. |
rcsb_chem_comp_related.resource_name | string | in exact_match exists | The resource name for the related chemical reference. Allowed Values: CAS , CCDC/CSD , COD , ChEBI , ChEMBL , DrugBank , Pharos , PubChem , RESID |
rcsb_chem_comp_synonyms.name | string | contains_phrase contains_words exists | The synonym of this particular chemical component. |
rcsb_chem_comp_synonyms.provenance_source | string | in exact_match exists | The provenance of this synonym. Allowed Values: ACDLabs , Author , ChEBI , ChEMBL , DrugBank , GMML , Lexichem , OpenEye OEToolkits , OpenEye/Lexichem , PDB Reference Data , PDB Reference Data (Preferred) , PDB-CARE , PubChem , RESID |
rcsb_chem_comp_synonyms.type | string | in exact_match exists | This data item contains the synonym type. Allowed Values: Brand Name , Common Name , Condensed IUPAC Carbohydrate Symbol , IUPAC Carbohydrate Symbol , Preferred Common Name , Preferred Name , Preferred Synonym , SNFG Carbohydrate Symbol , Synonym , Systematic Name |
rcsb_chem_comp_target.name | string | contains_phrase contains_words exists | The chemical component target name. |
rcsb_id | string | in exact_match exists | A unique identifier for the chemical definition in this container. |
drugbank_container_identifiers.drugbank_id | string | in exact_match exists | The DrugBank accession code |
drugbank_info.affected_organisms | string | contains_phrase contains_words exists | The DrugBank drug affected organisms. |
drugbank_info.atc_codes | string | in exact_match exists | The Anatomical Therapeutic Chemical Classification System (ATC) codes. |
drugbank_info.brand_names | string | contains_phrase contains_words exists | DrugBank drug brand names. |
drugbank_info.cas_number | string | in exact_match exists | The DrugBank assigned Chemical Abstracts Service identifier. |
drugbank_info.description | string | contains_phrase contains_words exists | The DrugBank drug description. |
drugbank_info.drug_categories | string | contains_phrase contains_words exists | The DrugBank drug categories. |
drugbank_info.drug_groups | string | in exact_match exists | The DrugBank drug groups determine their drug development status. Allowed Values: approved , experimental , illicit , investigational , nutraceutical , vet_approved , withdrawn |
drugbank_info.indication | string | contains_phrase contains_words exists | The DrugBank drug indication. |
drugbank_info.mechanism_of_action | string | contains_phrase contains_words exists | The DrugBank drug mechanism of actions. |
drugbank_info.name | string | contains_phrase contains_words exists | The DrugBank drug name. |
drugbank_info.pharmacology | string | contains_phrase contains_words exists | The DrugBank drug pharmacology. |
drugbank_info.synonyms | string | contains_phrase contains_words exists | DrugBank drug name synonyms. |
drugbank_info.drug_products.approved | string | in exact_match exists | Indicates whether this drug has been approved by the regulating government. Allowed Values: N , Y |
drugbank_info.drug_products.country | string | in exact_match exists | The country where this commercially available drug has been approved. Allowed Values: Canada , EU , US |
drugbank_info.drug_products.ended_marketing_on | date | equals greater less greater_or_equal less_or_equal range exists | The ending date for market approval. |
drugbank_info.drug_products.started_marketing_on | date | equals greater less greater_or_equal less_or_equal range exists | The starting date for market approval. |
drugbank_target.interaction_type | string | contains_phrase contains_words exists | The type of target interaction. |
drugbank_target.name | string | contains_phrase contains_words exists | The target name. |
drugbank_target.organism_common_name | string | contains_phrase contains_words exists | The organism common name. |
drugbank_target.target_actions | string | contains_phrase contains_words exists | The actions of the target interaction. |